You can to any except maybe Fenchurch Street and Mary-le-Bone in only one change from any other.
Well Fenchurch street doesn't have a tube station of it's own at all, it's shown on the map with a dotted line to tower hill.
If we count tower hill as the tube station for fenchurch street, I think all the London terminals can be done with at most two tube legs, even with the current closure of the northern line bank branch, even if we don't count Euston Square as part of Euston and even if we don't use thameslink.
The list of london terminals (according to NRE) is
Blackfriers*, Cannon St*, Charing cross, Euston, Fenchurch St*, Kings Cross*, Liverpool St*, London Bridge, Marlybone, Moorgate*, Paddington*,St Pancras*, Victoria*, Waterloo
Those I have marked with a * are on the circle line (as above counting tower hill as the tube station for Fenchurch St) so are directly connected. All the others are within one tube journey of the circle line.
So that leaves the following combinations, which I have manually checked are possible in at most two tube legs.
Charing Cross - Euston : Northern line
Charing Cross - London Bridge: Northern followed by Jubilee.
Charing Cross - Marlybone: Bakerloo
Charing Cross - Waterloo: Bakerloo or Northern
Euston - London Birdge : Normally the bank branch of the Northern line, but that is closed right now. so Northern followed by Jubilee
Euston - Marlybone : Victoria followed by Bakerloo
Euston - Waterloo: Northern line.
Longon bridge - Marlybone: Jubilee followed by Bakerloo
Waterloo - Marlybone: Bakerloo.
Kings Cross/St. Pancras to Waterloo is a bit of a pain, as there are several options with different pros/cons such as cross-platform changes, crowding etc. If you're heading for SW suburban land there's the Vauxhall option but longer-distance services don't call there.
Agreed, that link has always seemed conspicuous by it's absence to me.
One workaround if you are coming from places like Letchworth or Cambridge is to take Thameslink all the way to London bridge. From Leeds, Sheffield etc crosscountry routes can become an option, but if you are doing something like Peterbough to Salisbury then you are probablly going to have to change twice in London.