Firstly, I'm going to assume you are referring to NR maintained track and I have answered accordingly:
Yep. Stressing rules have changed about a bit in the last updates - Some of it has moved to 2102. The intention long term is that 3011 becomes a 'how to stress' manual and the 2102 becomes the why/requirements for compliance etc.
Latest 2102 contains this:
There's no rule I can think of that prevents stressing on waybeams specifically. It's more whether the actual design and materials are up to taking the loads, and also account needs to be made of any forces from structural movement as per any bridge.
Indeed, the level ii competence specifically lists stressing on longitudinal timbers.
What version do you have? Latest 2102 is Issue 10. Latest 3011 (was 0011 but that was a good few years back now) is Issue 7.
HTH