This has been for years particularly noticeable during the Leaf Fall season of course, when (on my patch if not others) re-timings of 2-3 minutes from point of origin (a.m) to ensure the peak Terminal workings stood a chance, and arrival at destination (p.m) were the order of the day.
It was well recognised that these measures were insufficient in reality in a small number of instances, but to go there from a TT plan point of view would mean quite drastic recasting of parts of the timetable (for a short period each year) and as the whole TT was one big knitting game, any such changes could get completely out of hand whereby additional (peak time) resources would be needed, both stock and crews. Just not possible for only three months of any given financial year, both financially and logistically.
I mention the above, as the problems mentioned in this thread are (potentially) taking the industry (journey times etc) in relation to planning and resourcing in a similar direction, and it may be that this is how the railway will be planned going forward, and people (passengers) have to get use to a slower journey experience?