He did make a comment about not having a direct run from Milton Keynes to Cambridge, which makes it sound that they wouldn't have that chord.
He showed a slide with a schematic showing 6 different routes between Bedford and Cambridge. I'm not sure if he mentioned anything that was not in the engineering report here http://www.networkrail.co.uk/wp-content/uploads/2017/03/Engineering-Summary-Report.pdf
The engineering report makes no mention of any northern routes via St Neots (South), so I'm not sure it's comparable...