Fare increases hurt the economy too. Fuel duty frozen, but fares still going up. If you have to put up one of the other then obviously it's going to be unpleasant for someone, and equally obviously it would be nicest if neither of them went up. But if you are financially constrained to put one of them up, and you care about quality of life and sustainability I think you'd opt to freeze rail fares. To me, George Osborne's choice speaks volumes about his lack of concern about the environment.
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And slightly off-topic, but also telling about George Osborne's priorities: From this link:
In other words, the additional spending includes 9 times as much money for one single road scheme then is announced for improving conditions for cyclists across the *entire country*. Sickeningly bad priorities