Though never a civil or mining engineer I was trained as an Electrical engineer by the now long defunct National Coal Board I can recall many tails and have observed the aftermath of what fault lines in coal seams can cause. Quite often flooding, they nearly lost the Selby complex due to fault lines, twice.
So back to the tunnel in question, that 'James Pit fault' looks ominous as it passed through the line of the tunnel, a good area for collapse and water ingress. I would hope Network Rails civil team will have looked at it closely, but I am just a retired electrical engineer, with mining experience so what do I know!