I do find it quite stark comparing the Elizabeth Line (EL) to Thameslink (TL), they are indeed essentially the same thing (RER) but the EL is far more well-known, well-used, and simply useful for journeys for Londoners than TL, which is arguably designed for non-Londoners in Hertfordshire, Kent and Surrey to get into London. It's particularly woeful for South Londoners. It should be a quick, direct, high-capacity route, but poor connections to other lines and awful-30 min frequencies mean most people I know who live near the line don't even consider it an option and instead bus to the nearest tube. Such a waste. It feels like a wasted opportunity that TL wasn't made more EL like in its central sections.
A few things here.
1) EL and TL are both high capacity railways through their cores, and there the similarities end. They are not ‘essentially the same thing’ in other respects.
2) EL through central London is a brand new railway on a brand new railway, designed as such. TL is a 157 year old railway, heavily modified in so far as it could be without demolishing swathes if central London.
3) EL directly connects the top 4 traffic generating areas in the London area: The City, the West End, Canary Wharf and Heathrow. TL neatly avoids them, thanks to our Victorian forefathers not anticipating the economy a century and a half in the future. Important to remember that the ‘Central Activity Zone’ of London is much wider E-W than it is tall N-S.
4) Whilst the EL is a fabulous railway (for which I can claim a minuscule amount of credit), it being concentrated on one corridor west and two east focuses the benefits there. TL with a wider network in the south spreads the benefit. You might see a less frequent service, but the connectivity is much better. St Albans - Greenwich, Woolwich to Luton airport, West Hampstead to Gatwick, Stevenage to London Bridge, etc etc. (I’m claiming a slightly larger amount of credit for TL too).
One final thing, how would you have made TL more like the EL in the central sections? The linespeed is as high as it can be without new tunnels, the stations are long enough for 240m trains, and used by them (the EL has the long stations but not the trains), and the frequency is actually pretty good - effectively turn up and go St Pancras - Blackfriars / London Bridge.