You will have a few effects such as the 10 day engineering works at Reading taking place this Easter which will effect the SWT services.
In fact, that's an incorrect assumption. The Reading work at Easter this year doesn't really affect SWT other than P6 being closed because of the adjacent worksite. They are running normally throughout but with an enhanced 4 tph service to Reading on certain days, ie the first Friday/Sat/Sun. This reduces the Weybridge service to provide the extra stock.
But as NSEFAN it is extremely busy section of line with Waterloo being the busiest of all the mainline stations. Hopefully, improvements will come when the old Eurostar platforms start to be opened up, but you will still have path issues for trains into Waterloo as there is no space to expand for trains entering into or out of the station.
Re-opening the Eurostar platforms eventually will alter the maintenance opportunities in the station area, but will do little to change the maintenance philosophy further out and specifically beyond Woking, where certain major diversions will always occur on an annual cycle. The sort of thing I mean being diversion of mainline services via Havant and Fareham on Sundays, but this still allows a service to operate. Closures west of Southampton will always cause problems as there is no diversionary route available.
However they eventually hope to shorten most maintenance closures to allow normal mainline routes to operate from Sunday afternoon, the so-called 7 day railway policy. The future proposals for maintenance access are discussed in the recently published route plan here:
http://www.networkrail.co.uk/browse...iture plans/route plans/wessex route plan.pdf
See under 'Route Network Availability Strategy'.
The original poster's question is specific to SWT, but the same problems of engineering access occur nearly everywhere AFAICS.