The Chiltern route is best served as a shuttle / second terminus at OOC, feeding Crossrail, GWML and HS2. But only if a ton of housing is built along the route.
West side - I think the best thing is to gradually increase Heathrow and then see if any extras (Hayes has a bay, West Drayton a turnback, all Maidenheads to Reading etc) could be added at peaks or other times. If needed. Very incremental and tricky with all the freight.
Staines - I always preferred this for HEx due to speed but again if it came with a lot of development, could be worth it. I’m not sure it would beat a Waterloo connection to Canary Wharf from Staines but might be competitive on West End and City.
East - nothing further via Stratford unless frequency adds.
South East - this is really where investment should go. Quad to Dartford (all stations have platforms but some semi fast patterns) - and take over the fast routes east of there to Gravesend. All SE services are loopers or Dartford terminators. East of Gravesend to Medway becomes HS1 only. Rainham paths redeployed as it leaves TL. That would be a huge improvement.