And I'm no Brunell, but surely if there's a massive hole in the tunnel floor through which all concrete will disappear, surely the answer is to lay some steel beams across ?
Box Tunnel near Bath has a river flowing under the track within the tunnel. IIRC, I was told that the track is supported by a combination of wood beams and maybe steel beams. I've never seen what supports the track (it's hidden by the ballast), but have walked along the track over the river (well the entire tunnel actually). You can clearly hear the water rushing under you where the river is.
The question is, how good is the rock that would need to support any beams?
As I said earlier, until we have more information, we are just guessing.
It's also possible that the recent discovery is not a "new" problem, but that the "problems" have been present since the time of construction. But over time, the railway has forgotten and the records (if any) have been lost. Or it was not good to start with, but has got worse.
And now, with different engineering standards to consider, no one will be happy for it to reopen until "strengthening" work has been carried out.